ccpem-pipeliner header image

The CCPEM-pipeliner is an integrated suite of software tools for processing single particle cryoEM data, from preprocessing raw image data through building and fitting atomic models.

The pipeliner brings together a variety of 3rd party software in a single unified framework for seamless integration of the different programs, along with tools for management and analysis of the project.

General info and installation

Getting started

Writing new jobs

Pipeliner API

Command line tools

Core Modules

Pipeliner jobs and plugins

Indices and tables