CCPEM-pipeliner

The CCPEM-pipeliner is an integrated suite of software tools for processing single particle cryoEM data, from preprocessing raw image data through building and fitting atomic models.

The pipeliner brings together a variety of 3rd party software in a single unified framework for seamless integration of the different programs, along with tools for management and analysis of the project.

General info and installation

• README

Getting started

• Getting started

Pipeliner API

• CCPEM-Pipeliner API
  • PipelinerProject
  • api_utilities

Comand line tools

• Command Line Tools

Additional tools

• Pipeliner benchmarking tool

Core Modules

• Pipeline Tools
  • Nodes and Processes
  • ProjectGraph
  • Metadata Tools
  • Pipeline Visualisation
• Tools for Running Jobs
  • The JobRunner
  • Check_completion
  • The job factory
• Star File Utilities
  • Star file reading utilities
  • Starfile writing utilities
• General Utilities

Pipeliner jobs and plugins

• Pipeliner Jobs

• Job Options

Indices and tables

• Index

• Module Index

• Search Page